In a follow up to our post on sequential biochemical pathways, we next wanted to present an method to approximate the concentration of a metabolic intermediate in a biosynthetic pathway. In general, under steady state conditions, the steady state concentration of a metabolite can be estimated from the ratio of the Vmax for the upstream rate-determining enzyme over the rate of decay of that metabolite. A more complete equation is detailed below and further discussed in our post on Estimating Protein/Metabolite Levels from RNAseq data.
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- McBane, G.C. Graduate Chemical Kinetics Lecture Notes. OSU875, http://faculty.gvsu.edu/mcbaneg/chem875.pdf
- Lauffenburger, D.A. Receptors: Models for Binding, Trafficking and Signalling, Oxford University Press 1993.
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